1. |
Dugger S, Platt A, Goldstein D B. Drug development in the era of precision medicine. Nat Rev Drug Discov, 2018, 17(3): 183-196.
|
2. |
Roses A D. Pharmacogenetics in drug discovery and development: a translational perspective. Nat Rev Drug Discov, 2008, 7(10): 807-817.
|
3. |
Vilar S, Harpaz R, Uriarte E, et al. Drug-drug interaction through molecular structure similarity analysis. J Am Med Inform Assoc, 2012, 19(6): 1066-1074.
|
4. |
Vilar S, Uriarte E, Santana L, et al. Similarity-based modeling in large-scale prediction of drug-drug interactions. Nat Protoc, 2014, 9(9): 2147-2163.
|
5. |
Wang Y L, Xiao J W, Suzek T O, et al. PubChem: a public information system for analyzing bioactivities of small molecules. Nucleic Acids Res, 2009, 37: W623-W633.
|
6. |
Yuan L, Guo L H, Yuan C A, et al. Integration of multi-omics data for gene regulatory network inference and application to breast cancer. IEEE/ACM Trans Comput Biol Bioinform, 2019, 16(3): 782-791.
|
7. |
Valdeolivas A, Tichit L, Navarro C, et al. Random walk with restart on multiplex and heterogeneous biological networks. Bioinformatics, 2019, 35(3): 497-505.
|
8. |
Shang H X, Liu Z P. Network-based prioritization of cancer genes by integrative ranks from multi-omics data. Comput Biol and Med, 2020, 119: 103692.
|
9. |
Ma X K, Liu Z Y, Zhang Z Y, et al. Multiple network algorithm for epigenetic modules via the integration of genome-wide DNA methylation and gene expression data. BMC Bioinformatics, 2017, 18(1): 72.
|
10. |
Chen J Y, Zhang S H. Integrative analysis for identifying joint modular patterns of gene-expression and drug-response data. Bioinformatics, 2016, 32(11): 1724-1732.
|
11. |
Zhou D Y, Bousquet O, Lal T N, et al. Learning with local and global consistency. Adv Neural Inf Proc Syst, 2003, 16(3): 321-328.
|
12. |
Page L, Brin S, Motwani R, et al. The PageRank citation ranking: bringing order to the Web. Stanford Digital Libraries Working Paper, 1998, 9(1): 1-14.
|
13. |
Cho M S, Lee J M, Lee K M. Reweighted random walks for graph matching. Lect Notes Comput Sc, 2010, 6315: 492-505.
|
14. |
Chen J Z, Peng H, Han G Q, et al. HOGMMNC: a higher order graph matching with multiple network constraints model for gene-drug regulatory modules identification. Bioinformatics, 2019, 35(4): 602-610.
|
15. |
Hirohashi S, Kanai Y. Cell adhesion system and human cancer morphogenesis. Cancer Sci, 2003, 94(7): 575-581.
|
16. |
Liang Zhongxing, Brooks J, Willard M, et al. CXCR4/CXCL12 axis promotes VEGF-mediated tumor angiogenesis through Akt signaling pathway. Biochem Biophys Res Commun, 2007, 359(3): 716-722.
|
17. |
Lin L P, Asthana S, Chan E, et al. Mapping the molecular determinants of BRAF oncogene dependence in human lung cancer. Proc Natl Acad Sci U S A, 2014, 111(7): E748-E757.
|
18. |
Robert C, Karaszewska B, Schachter J, et al. Improved overall survival in melanoma with combined dabrafenib and trametinib. N Engl J Med, 2015, 372(1): 30-39.
|
19. |
Kim K B, Kefford R, Pavlick A C, et al. Phase II study of the MEK1/MEK2 inhibitor Trametinib in patients with metastatic BRAF-mutant cutaneous melanoma previously treated with or without a BRAF inhibitor. J Clin Oncol, 2013, 31(4): 482-489.
|