Organoids are an in vitro model that can simulate the complex structure and function of tissues in vivo. Functions such as classification, screening and trajectory recognition have been realized through organoid image analysis, but there are still problems such as low accuracy in recognition classification and cell tracking. Deep learning algorithm and organoid image fusion analysis are the most advanced organoid image analysis methods. In this paper, the organoid image depth perception technology is investigated and sorted out, the organoid culture mechanism and its application concept in depth perception are introduced, and the key progress of four depth perception algorithms such as organoid image and classification recognition, pattern detection, image segmentation and dynamic tracking are reviewed respectively, and the performance advantages of different depth models are compared and analyzed. In addition, this paper also summarizes the depth perception technology of various organ images from the aspects of depth perception feature learning, model generalization and multiple evaluation parameters, and prospects the development trend of organoids based on deep learning methods in the future, so as to promote the application of depth perception technology in organoid images. It provides an important reference for the academic research and practical application in this field.