Objective To investigate the correlation of intracranial arachnoid cyst (IAC) with epilepsy and the possible mechanism of seizure induced by IAC. Methods Patients with IAC, who were treated in West China Hospital of Sichuan University between January 2009 and January 2019, were included and divided into IAC with epilepsy group and IAC without epilepsy group according to whether they were diagnosed with epilepsy. We collected the IAC location information of all subjects after the establishment of a three-dimensional spatial coordinate system of MRI images. Computational fluid dynamics technology was used to establish a blood vessel model in cyst area and perform hemodynamic analysis basing on contrast-enhanced CT images. Results A total of 72 patients were enrolled, including 24 in the IAC with epilepsy group and 48 in the IAC without epilepsy group. There was no significant difference between the two groups in terms of sex, age, IAC location, the volumes or the maximum diameters of IAC (P>0.05). Consecutive areas formed by the seven high-risk areas found in the IAC with epilepsy group were located in the temporal area. The seven high-risk areas were simultaneous IAC location in 5 patients in the IAC with epilepsy group and in 1 patient in the IAC without epilepsy group, and the difference was statistically significant (χ2=5.114, P=0.024). Comparison of the hemodynamic parameters between the two types of vascular models revealed similar pressure changes and blood pressure parameters, with lower blood flow and higher mean vascular wall shear stress in the IAC with epilepsy group. Conclusions IAC may cause epilepsy by increasing adjacent blood vessel stenosis and blood vessel wall shear stress through cyst space-occupying effect. The most common location of IAC with epilepsy is the temporal area. The occupying effect of IAC should be considered in the location of epileptogenic foci before surgery for IAC patients with epilepsy.